Difference between revisions of "TransMed 2020"

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(Abstract submission)
(Agenda)
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! Topic
 
! Topic
 
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|-
| 10:15 AM
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| style="background-color:#6495ed;" | 10:40 AM
| 10:20 AM
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| style="background-color:#6495ed;" | 11:20 AM
| Welcome & Start - <span style="color:red">TBD</span>
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| style="background-color:#6495ed;" | Keynote (Live-stream) - 20 Challenges of AI in Medicine - <span style="color:red">Jason H. Moore</span>
 
|-
 
|-
| style="background-color:#6495ed;" | 10:20 AM
 
| style="background-color:#6495ed;" | 11:10 AM
 
| style="background-color:#6495ed;" | Keynote - TBD - <span style="color:red">TBD</span>
 
|-
 
| style="background-color:#ffe4e1;" | 11:10 AM
 
 
| style="background-color:#ffe4e1;" | 11:20 AM
 
| style="background-color:#ffe4e1;" | 11:20 AM
| style="background-color:#ffe4e1;" | Proceedings - TBD - <span style="color:red">TBD</span>
+
| style="background-color:#ffe4e1;" | 11:40 AM
 +
| style="background-color:#ffe4e1;" | Proceedings (Pre-recorded with live Q&A)- Privacy-preserving Construction of Generalized Linear Mixed Model for Biomedical Computation - <span style="color:red">Rui Zhu</span>
 +
|-
 +
| style="background-color:#ffe4e1;" | 12:00 PM
 +
| style="background-color:#ffe4e1;" | 12:20 PM
 +
| style="background-color:#ffe4e1;" | (Pre-recorded with live Q&A) - Longitudinal multi-omics profiling reveals two biological seasonal patterns in California - <span style="color:red">Ahmed Metwally</span>
 +
|-
 +
| style="background-color:#ffe4e1;" | 12:20 PM
 +
| style="background-color:#ffe4e1;" | 12:30 PM
 +
| style="background-color:#ffe4e1;" | (Pre-recorded with live Q&A) - A versatile non-linear transfer learning framework for correcting pre-clinical-based predictors of drug response - <span style="color:red">Soufiane Mourragui</span>
 +
|-
 +
| style="background-color:#f8ff00;" | 12:30 PM
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| style="background-color:#f8ff00;" | 12:40 PM
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| style="background-color:#f8ff00;" | Q&A
 +
|-
 +
| style="background-color:#ffe4e1;" | 2:00 PM
 +
| style="background-color:#ffe4e1;" | 2:20 PM
 +
| style="background-color:#ffe4e1;" | Proceedings (Pre-recorded with live Q&A) - Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms of breast cancer metastasis - <span style="color:red">Yifeng Tao</span>
 +
|-
 +
| style="background-color:#ffe4e1;" | 2:20 PM
 +
| style="background-color:#ffe4e1;" | 2:30 PM
 +
| style="background-color:#ffe4e1;" | (Pre-recorded with live Q&A) - Deep Hidden Physics Modeling of Cell Signaling Networks - <span style="color:red">Rune Linding</span>
 +
|-
 +
| style="background-color:#ffe4e1;" | 2:30 PM
 +
| style="background-color:#ffe4e1;" | 2:40 PM
 +
| style="background-color:#ffe4e1;" | (Pre-recorded with live Q&A) - A deep transfer learning model for extending in vitro CRISPR-Cas9 viability screens to tumors - <span style="color:red">Yu-Chiao Chiu</span>
 +
|-
 +
| style="background-color:#ffe4e1;" | 2:40 PM
 +
| style="background-color:#ffe4e1;" | 2:50 PM
 +
| style="background-color:#ffe4e1;" | (Pre-recorded with live Q&A) - The evolution of homologous repair deficiency in high grade serous ovarian carcinoma - <span style="color:red">Colin Semple</span>
 +
|-
 +
| style="background-color:#f8ff00;" | 2:50 PM
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| style="background-color:#f8ff00;" | 3:00 PM
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| style="background-color:#f8ff00;" | Q&A
 
|-
 
|-
 
| style="background-color:#ffe4e1;" | 3:20 PM
 
| style="background-color:#ffe4e1;" | 3:20 PM
| style="background-color:#ffe4e1;" | 3:30 PM
+
| style="background-color:#ffe4e1;" | 3:40 PM
| style="background-color:#ffe4e1;" | TBD - <span style="color:red">TBD</span>
+
| style="background-color:#ffe4e1;" | Proceedings (Pre-recorded with live Q&A) - Identifying diagnosis-specific genotype-phenotype associations via joint multi-task sparse canonical correlation analysis and classification - <span style="color:red">Lei Du</span>
 
|-
 
|-
| style="background-color:#f8ff00;" | 4:00 PM
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| style="background-color:#ffe4e1;" | 3:40 PM
 +
| style="background-color:#ffe4e1;" | 4:00 PM
 +
| style="background-color:#ffe4e1;" | (Pre-recorded with live Q&A) - POCOVID-Net: Automatic Detection of COVID-19 From a New Lung Ultrasound Imaging Dataset (POCUS) - <span style="color:red">Jannis Born</span>
 +
|-
 +
| style="background-color:#ffe4e1;" | 4:00 PM
 +
| style="background-color:#ffe4e1;" | 4:20 PM
 +
| style="background-color:#ffe4e1;" | (Pre-recorded with live Q&A) - Drug repurposing to improve health and lifespan in humans - <span style="color:red">Handan Melike Donertas</span>
 +
|-
 +
| style="background-color:#ffe4e1;" | 4:20 PM
 +
| style="background-color:#ffe4e1;" | 4:30 PM
 +
| style="background-color:#ffe4e1;" | (Pre-recorded with live Q&A) - Patient Derived Xenografts Based Pharmacogenomics for Precision Medicine - <span style="color:red">Arvind Singh Mer</span>
 +
|-
 +
| style="background-color:#f8ff00;" | 4:30 PM
 
| style="background-color:#f8ff00;" | 4:40 PM
 
| style="background-color:#f8ff00;" | 4:40 PM
| style="background-color:#f8ff00;" | Break
+
| style="background-color:#f8ff00;" | Q&A
 
|-
 
|-
| style="background-color:#6495ed;" | 4:40 PM
+
| style="background-color:#ffe4e1;" | 5:00 PM
| style="background-color:#6495ed;" | 5:10 PM
+
| style="background-color:#ffe4e1;" | 5:10 PM
| style="background-color:#6495ed;" | TBD - <span style="color:red">TBD</span>
+
| style="background-color:#ffe4e1;" | (Pre-recorded with live Q&A) - ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis - <span style="color:red">Johannes Griss</span>
 
|-
 
|-
| style="background-color:#ffe4e1;" | 5:50 PM
+
| style="background-color:#6495ed;" | 5:10 PM
| style="background-color:#ffe4e1;" | 6:00 PM
+
| style="background-color:#6495ed;" | 5:50 PM
| style="background-color:#ffe4e1;" | Invited talk - TBD - <span style="color:red">TBD</span>
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| style="background-color:#6495ed;" | Keynote (Live-stream) - TBD - <span style="color:red">Atul Butte</span>
 
|-
 
|-
| 6:00 PM
+
| | 5:50 PM
|  
+
| | 6:00 PM
| Conclusion Remarks - <span style="color:red">TBD</span>
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| | Closing remarks (Live-stream) <span style="color:red">Maria Secrier</span>
 
|}
 
|}
  

Revision as of 17:39, 2 July 2020

Description

Knowledge-based translational medicine is a rapidly growing discipline in biomedical research and aims to expedite the discovery of new diagnostic tools and treatments by using a multi-disciplinary, highly collaborative, "bench-to-bedside" approach. Large amounts of multi-omics, imaging (medical and molecular) and clinical data can now be captured for given patient populations. In addition to the challenges of data curation and harmonisation, new computational methods are required to identify molecular signatures that suggest disease subtype. These signatures may be predictive of outcome or progression, and impact on disease management by suggesting personalised therapeutic strategies for patients. Such approaches will further the development of a new taxonomy of disease.

In the TransMed COSI meeting, we will explore the current status of computational biology approaches within the field of translational medicine.

Information of previous TransMed meeting(s) can be found here.

Link to the ISMB 2020 website is:here

Please note:

  • The TransMed COSI meeting will take place on July TBD, 2020, during the ISMB 2020, Montréal, Canada.


Topics of interest

Topics of interest include, but are not limited to:

  • Clinical and molecular data storage and integration infrastructure, including: data warehousing for translational medicine, multi-‘omics and clinical data integration, data visualization in translational medicine
  • Curation and harmonization of clinical, ‘omics and imaging data, including: standards and ontologies in translational medicine, biomedical text mining and semantic representation
  • Data analytics for patient stratification, biomarker and target discovery, including: disease subtype discovery, Electronic Health Records integration, translational imaging, multi-scale modelling, high performance and cloud computing in translational medicine, mathematical modelling for disease processes, pathways and networks
  • Computational approaches for target selection and drug discovery, including: druggability assessment and target selection, polypharmacology, drug reuse, chemical library design, virtual screening technologies, drug discovery enabler pipelines and databases, chemical tool analysis.
  • ADME/PK and Tox models, including: databases and modeling approaches for ADME and PK, machine learning approaches to predicting toxicity, modeling of pharmacokinetics to man and model organism utility models.
  • Translational Medicine Informatics Applications/Case Studies, including: Next generation sequencing annotation and biomedicine applications, clinical data integration and application.

Keynote speakers

TBD, TBD

Keynote title: TBD

TBD, TBD

Keynote title: TBD

TBD, TBD

Keynote title: TBD

Agenda

Start time End time Topic
10:40 AM 11:20 AM Keynote (Live-stream) - 20 Challenges of AI in Medicine - Jason H. Moore
11:20 AM 11:40 AM Proceedings (Pre-recorded with live Q&A)- Privacy-preserving Construction of Generalized Linear Mixed Model for Biomedical Computation - Rui Zhu
12:00 PM 12:20 PM (Pre-recorded with live Q&A) - Longitudinal multi-omics profiling reveals two biological seasonal patterns in California - Ahmed Metwally
12:20 PM 12:30 PM (Pre-recorded with live Q&A) - A versatile non-linear transfer learning framework for correcting pre-clinical-based predictors of drug response - Soufiane Mourragui
12:30 PM 12:40 PM Q&A
2:00 PM 2:20 PM Proceedings (Pre-recorded with live Q&A) - Robust and accurate deconvolution of tumor populations uncovers evolutionary mechanisms of breast cancer metastasis - Yifeng Tao
2:20 PM 2:30 PM (Pre-recorded with live Q&A) - Deep Hidden Physics Modeling of Cell Signaling Networks - Rune Linding
2:30 PM 2:40 PM (Pre-recorded with live Q&A) - A deep transfer learning model for extending in vitro CRISPR-Cas9 viability screens to tumors - Yu-Chiao Chiu
2:40 PM 2:50 PM (Pre-recorded with live Q&A) - The evolution of homologous repair deficiency in high grade serous ovarian carcinoma - Colin Semple
2:50 PM 3:00 PM Q&A
3:20 PM 3:40 PM Proceedings (Pre-recorded with live Q&A) - Identifying diagnosis-specific genotype-phenotype associations via joint multi-task sparse canonical correlation analysis and classification - Lei Du
3:40 PM 4:00 PM (Pre-recorded with live Q&A) - POCOVID-Net: Automatic Detection of COVID-19 From a New Lung Ultrasound Imaging Dataset (POCUS) - Jannis Born
4:00 PM 4:20 PM (Pre-recorded with live Q&A) - Drug repurposing to improve health and lifespan in humans - Handan Melike Donertas
4:20 PM 4:30 PM (Pre-recorded with live Q&A) - Patient Derived Xenografts Based Pharmacogenomics for Precision Medicine - Arvind Singh Mer
4:30 PM 4:40 PM Q&A
5:00 PM 5:10 PM (Pre-recorded with live Q&A) - ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis - Johannes Griss
5:10 PM 5:50 PM Keynote (Live-stream) - TBD - Atul Butte
5:50 PM 6:00 PM Closing remarks (Live-stream) Maria Secrier

Abstract submission

Authors are invited to submit abstracts (1 page) for presentations and posters by April 2, 2020. Acceptance notification will be sent out by April 30, 2020.

For proceedings submission the deadline is Monday, January 30, 2020

Please use the EasyChair submission system.

Key dates

  • Detail information can be found: here.

Venue

The TransMed COSI meeting will take place on July 12th-16th, 2020, during the ISMB 2020 at Palais des congrès de Montréal (Montreal Convention Centre), Montréal, Canada.

Sponsorship

We would like to thank our sponsors:

for their kind support:


Registration

Please follow the registration page on the ISMB website: TransMed COSI Registration.

Organizing committee

Venkata Satagopam, Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg

Reinhard Schneider, Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg

Maria Secrier, University College London, UK

Wei Gu, Luxembourg Centre For Systems Biomedicine (LCSB), University of Luxembourg, Luxembourg

Mansoor Saqi, King’s College London, UK

Programme committee (alphabetical order)

TBD, TBD, TBD

Contact us

If you have any questions, please do not hesitate to contact us: transmed-cosi-chair@googlegroups.com.

Follow us

Google Groups: TransMed2020 Google Group

Twitter: #TransMed2020

Linkedin: Translational Medicine Informatics & Applications Group

Acknowledgement

The current TransMed logo was designed by Belinda Hanson.

The previous TransMed logo was designed by Alexandre Pellet, www.alexandrepellet.com.